Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8080

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16447 and 16448 are separated by 168 nucleotides16448 and 16449 are separated by 175 nucleotides mRNA_8079: 16447 - BLAST PRMT5-domain-containing protein [Sanghuangporus baumii], at 372,456 to 373,383 16447 mRNA_8080: 16448 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 373,552 to 376,166 16448 mRNA_8081: 16449 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 376,342 to 377,975 16449

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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372,675 - 16447 mRNA_8079 0.24 -0.5
373,117 - 16447 mRNA_8079 0.71 +0.9
373,124 + 16447 mRNA_8079 0.72 +0.5
373,263 - 16447 mRNA_8079 0.87 +0.8
373,269 + 16447 mRNA_8079 0.88 -1.6
373,409 - -0.1
373,416 + +0.1
373,550 + -0.8
373,554 - +0.1
373,561 - +1.9
373,856 + 16448 mRNA_8080 0.12 +0.5
374,267 - 16448 mRNA_8080 0.27 +0.7
374,292 + 16448 mRNA_8080 0.28 +0.5
374,445 + 16448 mRNA_8080 0.34 -0.5
374,877 - 16448 mRNA_8080 0.51 +0.3
375,149 - 16448 mRNA_8080 0.61 -0.5
375,164 - 16448 mRNA_8080 0.62 -0.7
375,518 - 16448 mRNA_8080 0.75 +0.1
376,215 - -0.6
376,227 - +0.2
376,336 - -0.8
376,351 - -0.6
376,351 + +0.0
376,479 - -0.1
376,496 + -0.9
376,894 + 16449 mRNA_8081 0.34 -3.2
376,930 + 16449 mRNA_8081 0.36 -3.2

Or see this region's nucleotide sequence