Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8083

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16450 and 16451 are separated by 197 nucleotides16451 and 16452 are separated by 111 nucleotides mRNA_8082: 16450 - BLAST zinc-binding oxidoreductase [Moesziomyces antarcticus..., at 378,453 to 379,519 16450 mRNA_8083: 16451 - K17774 MDM10 mitochondrial distribution and morphology protein 10, at 379,717 to 381,351 16451 mRNA_8084: 16452 - K05351 E1.1.1.9 D-xylulose reductase, at 381,463 to 383,498 16452

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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381,561 - -0.5
382,183 - 16452 mRNA_8084 0.35 -2.0
382,303 - 16452 mRNA_8084 0.41 -0.2
382,322 - 16452 mRNA_8084 0.42 +0.2
382,340 + 16452 mRNA_8084 0.43 +1.8

Or see this region's nucleotide sequence