Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8093

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16460 and 16461 are separated by 381 nucleotides16461 and 16462 are separated by 190 nucleotides mRNA_8092: 16460 - K14457 MOGAT2, MGAT2 2-acylglycerol O-acyltransferase 2, at 399,883 to 401,738 16460 mRNA_8093: 16461 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 402,120 to 403,069 16461 mRNA_8094: 16462 - K10775 PAL phenylalanine ammonia-lyase, at 403,260 to 405,803 16462

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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401,282 - 16460 mRNA_8092 0.75 -0.5
401,285 - 16460 mRNA_8092 0.76 -0.5
401,701 + -1.9
401,713 + -0.6
401,837 + +1.5
401,843 - +1.6
401,931 - -0.5
401,967 + -4.5
401,976 + -0.3
401,985 + +0.2
401,996 + -0.2
402,008 + +1.1
402,023 - +0.5
402,029 + -2.5
402,163 + +0.1
402,192 - -0.8
402,200 - -0.0
402,312 - 16461 mRNA_8093 0.20 +0.9
402,367 - 16461 mRNA_8093 0.26 -3.7
402,448 - 16461 mRNA_8093 0.35 +2.1
402,596 - 16461 mRNA_8093 0.50 +0.9
402,763 - 16461 mRNA_8093 0.68 +0.5
402,810 + 16461 mRNA_8093 0.73 -0.2
403,041 + +1.8
403,075 + +1.5
403,131 - +2.8
403,188 - -0.0
403,237 - -1.6
403,278 + +0.8
403,305 - -2.5
403,667 + 16462 mRNA_8094 0.16 -0.4

Or see this region's nucleotide sequence