Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8097

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16464 and 16465 are separated by 333 nucleotides16465 and 16466 are separated by 494 nucleotides mRNA_8096: 16464 - K13338 PEX1 peroxin-1, at 408,811 to 412,943 16464 mRNA_8097: 16465 - KOG0118 FOG RRM domain, at 413,277 to 414,722 16465 mRNA_8098: 16466 - Hypothetical Protein, at 415,217 to 416,223 16466

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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412,931 + -0.2
412,953 - -1.0
412,967 + -0.2
412,968 + -2.5
412,970 - -3.2
412,972 + -1.1
412,974 - -0.8
412,980 + +1.4
412,982 + -1.0
413,023 + -0.6
413,053 - -0.2
413,079 - -1.1
413,081 - +0.1
413,164 - -1.1
413,194 - +0.9
413,200 + +1.1
413,320 - +0.9
414,049 - 16465 mRNA_8097 0.53 -2.1
414,075 - 16465 mRNA_8097 0.55 +0.5
414,344 + 16465 mRNA_8097 0.74 +0.7
414,356 + 16465 mRNA_8097 0.75 +0.1
414,632 - +1.5
414,958 + +0.8
415,075 - -0.5
415,378 + 16466 mRNA_8098 0.16 -0.4
415,393 + 16466 mRNA_8098 0.17 -0.2
415,645 - 16466 mRNA_8098 0.43 +0.8

Or see this region's nucleotide sequence