Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8106

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16473 and 16474 are separated by 130 nucleotides16474 and 16475 are separated by 358 nucleotides mRNA_8105: 16473 - Hypothetical Protein, at 424,921 to 425,494 16473 mRNA_8106: 16474 - K13511 TAZ monolysocardiolipin acyltransferase, at 425,625 to 426,745 16474 mRNA_8107: 16475 - K01937 pyrG, CTPS CTP synthase, at 427,104 to 429,524 16475

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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424,626 - -0.5
424,660 - -0.3
424,660 - -0.2
424,676 + -2.7
424,692 + +0.3
424,698 + -0.7
424,700 - -2.3
424,709 - -1.1
424,714 - +1.0
424,721 - -0.7
424,732 + +0.0
424,733 + +0.4
424,739 + -1.7
424,750 - +0.3
424,751 + -0.4
424,753 + -1.9
424,755 - -0.0
424,756 + +1.0
424,757 + -0.0
424,761 - -0.3
424,762 + -0.8
424,764 + +0.0
424,768 + -0.2
424,772 + -0.6
424,775 - +0.5
424,795 - +1.9
424,812 + +0.8
424,829 + +0.3
424,847 - -0.2
424,848 - -1.4
424,892 + +1.6
424,899 + -1.2
424,906 + -0.9
424,910 - +0.4
424,913 + +1.2
424,918 - -0.2
424,952 + -0.9
424,971 - +1.3
425,036 + 16473 mRNA_8105 0.20 -0.3
425,039 + 16473 mRNA_8105 0.21 +1.0
425,117 + 16473 mRNA_8105 0.34 -1.1
425,175 + 16473 mRNA_8105 0.44 +1.8
425,194 + 16473 mRNA_8105 0.48 -0.6
425,194 - 16473 mRNA_8105 0.48 -0.6
425,199 - 16473 mRNA_8105 0.48 +1.1
425,202 - 16473 mRNA_8105 0.49 -0.2
425,218 + 16473 mRNA_8105 0.52 -0.5
425,246 - 16473 mRNA_8105 0.57 -0.7
425,308 - 16473 mRNA_8105 0.67 -3.0
425,341 - 16473 mRNA_8105 0.73 +0.1
425,343 - 16473 mRNA_8105 0.74 -0.2
425,368 - 16473 mRNA_8105 0.78 -0.2
425,378 - 16473 mRNA_8105 0.80 +0.2
425,385 + 16473 mRNA_8105 0.81 -0.3
425,419 - 16473 mRNA_8105 0.87 +1.0
425,426 - 16473 mRNA_8105 0.88 -0.1
425,497 - -3.3
425,512 - -0.7
425,527 + -0.9
425,528 + -0.4
425,572 + -0.3
425,620 - +0.4
425,699 - -3.3
425,701 - -0.6
425,709 + -1.3
425,719 + -3.5
425,741 - 16474 mRNA_8106 0.10 -3.1
425,752 - 16474 mRNA_8106 0.11 -2.2
425,801 + 16474 mRNA_8106 0.16 -0.6
425,832 + 16474 mRNA_8106 0.18 -1.3
425,833 - 16474 mRNA_8106 0.19 -2.2
425,896 + 16474 mRNA_8106 0.24 +1.0
425,903 + 16474 mRNA_8106 0.25 -1.5
426,041 + 16474 mRNA_8106 0.37 -2.5
426,058 + 16474 mRNA_8106 0.39 -1.7
426,179 + 16474 mRNA_8106 0.49 -2.7
426,642 - -3.3
426,643 + -2.2
426,795 + -0.5
426,797 - +0.9
426,797 + -1.2
426,808 + +1.8

Or see this region's nucleotide sequence