Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8109

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16476 and 16477 are separated by 591 nucleotides16477 and 16478 are separated by 547 nucleotides mRNA_8108: 16476 - K17637 EXOC2, SEC5 exocyst complex component 2, at 429,862 to 433,885 16476 mRNA_8109: 16477 - K00679 E2.3.1.158 phospholipid-diacylglycerol acyltransferase, at 434,477 to 437,050 16477 mRNA_8110: 16478 - HMMPfam-G protein-coupled glucose receptor regulating Gpa2-PF11710,SUPERFAMILY--SSF81321, at 437,598 to 439,156 16478

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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433,840 + +0.9
433,943 + -0.1
433,945 - +1.7
433,966 + -0.0
433,972 - +0.1
433,973 - +0.6
433,974 - -0.8
434,100 + +0.6
434,111 + +0.9
434,119 + +1.5
434,226 - -4.0
434,245 + -0.1
434,548 + +1.1
435,618 - 16477 mRNA_8109 0.44 -0.3
436,013 - 16477 mRNA_8109 0.60 -0.1
436,154 + 16477 mRNA_8109 0.65 -0.7
436,431 - 16477 mRNA_8109 0.76 +0.1
436,599 + 16477 mRNA_8109 0.82 -0.4
436,722 + 16477 mRNA_8109 0.87 -0.3
436,865 - -0.1
436,953 - -3.1
436,962 - +0.8
437,009 - -1.7
437,051 + +1.4
437,068 + +0.6
437,140 - +1.1
437,167 - +1.3
437,182 + +0.2
437,185 + -1.4
437,190 - -1.3
437,191 + -0.4
437,195 + +0.7
437,203 + +1.3
437,204 - -1.7
437,207 - +1.5
437,208 - -1.7
437,210 - -0.4
437,213 - +0.3
437,238 - +3.6
437,253 + -0.4
437,272 - -0.5
437,278 + +0.3
437,280 + -0.0
437,298 - +0.5
437,306 + +0.1
437,309 + -0.2
437,310 + -0.4
437,337 + +0.3
437,338 - +0.9
437,365 + +0.7
437,379 + +0.0
437,382 + +1.1
437,382 - -1.5
437,390 - +0.6
437,395 + -0.2
437,395 - +1.0
437,407 - -0.2
437,413 + -1.0
437,421 - +0.4
437,423 - +0.2
437,425 + -1.4
437,426 + -1.1
437,428 + +1.5
437,470 + +0.2
437,474 - +0.3
437,477 + -0.4
437,483 - -0.2
437,485 - -2.3
437,490 + -2.4
437,496 + +0.2
437,500 + -0.1
437,508 + +0.4
437,512 + +0.6
437,516 + +0.4
437,518 + +0.4
437,521 + -1.0
437,527 - +1.8
437,529 - -1.1
437,533 + -0.1
437,539 - -0.4
437,539 + +0.8
437,546 + +1.1
437,570 - -1.2
437,594 + -1.6
437,676 - -0.3
437,688 + -1.0
437,737 - +0.2
437,830 + 16478 mRNA_8110 0.15 -0.1
437,834 + 16478 mRNA_8110 0.15 +0.4
437,976 - 16478 mRNA_8110 0.24 +0.1
437,997 - 16478 mRNA_8110 0.26 -0.2

Or see this region's nucleotide sequence