Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8182

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16548 and 16549 are separated by 87 nucleotides16549 and 16550 are separated by 173 nucleotides16550 and 16551 are separated by 9 nucleotides16551 and 16552 are separated by 304 nucleotides mRNA_8180: 16548 - K13127 RNF113A, CWC24 RING finger protein 113A, at 613,134 to 614,430 16548 mRNA_8181: 16549 - KOG1752 Glutaredoxin and related proteins, at 614,518 to 615,150 16549 mRNA_8182: 16550 - Hypothetical Protein, at 615,324 to 615,950 16550 mRNA_8183: 16551 - Hypothetical Protein, at 615,960 to 616,439 16551 mRNA_8184: 16552 - K00988 APA1_2 ATP adenylyltransferase, at 616,744 to 618,050 16552

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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614,426 + -1.6
615,076 - 16549 mRNA_8181 0.88 -0.4
615,659 - 16550 mRNA_8182 0.53 -0.1
615,672 - 16550 mRNA_8182 0.56 +0.6
615,694 - 16550 mRNA_8182 0.59 +0.2
616,447 - -0.5

Or see this region's nucleotide sequence