Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8195

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16562 and 16563 are separated by 487 nucleotides16563 and 16564 are separated by 110 nucleotides mRNA_8194: 16562 - K20794 NAA40, NAT4 N-alpha-acetyltransferase 40, at 644,404 to 645,092 16562 mRNA_8195: 16563 - Hypothetical Protein, at 645,580 to 648,404 16563 mRNA_8196: 16564 - K13501 TRP1 anthranilate synthase / indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase, at 648,515 to 650,860 16564

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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644,628 - 16562 mRNA_8194 0.33 +0.8
644,650 + 16562 mRNA_8194 0.36 -1.3
644,809 + 16562 mRNA_8194 0.59 +1.2
645,368 + -0.7
645,384 - +0.8
645,384 - +1.5
645,419 + +1.2
645,538 + -0.1
645,541 + +0.5
645,550 - +1.2
646,267 + 16563 mRNA_8195 0.24 -1.9
646,406 - 16563 mRNA_8195 0.29 +0.3
646,417 + 16563 mRNA_8195 0.30 +0.5
647,442 + 16563 mRNA_8195 0.66 +0.3
647,543 - 16563 mRNA_8195 0.69 +0.6
648,230 - -1.1

Or see this region's nucleotide sequence