Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8219

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16586 and 16587 are separated by 297 nucleotides16587 and 16588 are separated by 228 nucleotides mRNA_8218: 16586 - K02905 RP-L29e, RPL29 large subunit ribosomal protein L29e, at 697,887 to 698,253 16586 mRNA_8219: 16587 - K15202 GTF3C5, TFC1 general transcription factor 3C polypeptide 5 (transcription factor C subunit 1), at 698,551 to 700,808 16587 mRNA_8220: 16588 - KOG3894 SNARE protein Syntaxin 18/UFE1, at 701,037 to 702,340 16588

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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697,783 + +1.4
698,266 + +0.7
698,853 - 16587 mRNA_8219 0.13 +0.0
698,977 - 16587 mRNA_8219 0.19 -0.3
699,080 + 16587 mRNA_8219 0.23 +1.1
699,270 + 16587 mRNA_8219 0.32 +2.1

Or see this region's nucleotide sequence