Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8224

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16591 and 16592 are separated by 719 nucleotides16592 and 16593 are separated by 265 nucleotides mRNA_8223: 16591 - K00801 FDFT1 farnesyl-diphosphate farnesyltransferase, at 707,140 to 708,844 16591 mRNA_8224: 16592 - K00948 PRPS, prsA ribose-phosphate pyrophosphokinase, at 709,564 to 711,429 16592 mRNA_8225: 16593 - HMMPfam-DSBA-like thioredoxin domain-PF01323,SUPERFAMILY--SSF52833, at 711,695 to 712,857 16593

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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709,208 + -0.4
709,241 - +0.7
709,318 - +1.2
709,354 - +0.1
709,370 + +1.5
711,879 - 16593 mRNA_8225 0.16 +1.0
712,125 - 16593 mRNA_8225 0.37 -1.5

Or see this region's nucleotide sequence