Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8235

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16602 and 16603 are separated by 417 nucleotides16603 and 16604 are separated by 169 nucleotides mRNA_8234: 16602 - KOG3702 Nuclear polyadenylated RNA binding protein, at 729,442 to 731,463 16602 mRNA_8235: 16603 - Hypothetical Protein, at 731,881 to 732,842 16603 mRNA_8236: 16604 - Interpro Fungal protein of unknown function (DUF1770) 0, at 733,012 to 733,833 16604

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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732,013 - 16603 mRNA_8235 0.14 -0.4
732,023 + 16603 mRNA_8235 0.15 +0.2
732,477 - 16603 mRNA_8235 0.62 +2.5
732,605 + 16603 mRNA_8235 0.75 +0.3
732,617 + 16603 mRNA_8235 0.77 +0.6
732,767 + +0.2
732,768 - +0.3
732,938 + +0.3
733,093 + -1.8
733,232 - 16604 mRNA_8236 0.27 +0.8
733,239 - 16604 mRNA_8236 0.28 -0.7
733,659 - 16604 mRNA_8236 0.79 +0.0
733,685 - 16604 mRNA_8236 0.82 +0.8
733,692 - 16604 mRNA_8236 0.83 -0.1
733,692 - 16604 mRNA_8236 0.83 -1.6
733,701 + 16604 mRNA_8236 0.84 -0.2
733,725 - 16604 mRNA_8236 0.87 -1.4
733,835 + +0.2
733,837 + +0.3

Or see this region's nucleotide sequence