Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8263

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16630 and 16631 are separated by 765 nucleotides16631 and 16632 are separated by 298 nucleotides mRNA_8262: 16630 - K01958 PC, pyc pyruvate carboxylase, at 792,361 to 796,882 16630 mRNA_8263: 16631 - KOG1432 Predicted DNA repair exonuclease SIA1, at 797,648 to 800,551 16631 mRNA_8264: 16632 - KOG4754 Predicted phosphoglycerate mutase, at 800,850 to 802,295 16632

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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796,756 + -0.3
796,770 + -0.6
796,773 - +0.4
796,793 - -0.5
796,809 + -1.7
796,906 - +0.4
796,906 + -0.4
796,926 + -0.1
796,939 + +0.5
796,944 - -1.5
796,956 + +2.3
797,053 - -1.0
797,057 - +0.6
797,082 - -0.1
797,084 + -0.5
797,087 - -0.8
797,090 + +2.1
797,112 - +0.3
797,221 + -0.9
797,222 + -0.4
797,223 - -0.4
797,238 - +0.9
797,251 - -1.3
797,275 + +0.5
797,283 - +0.8
797,284 + +0.2
797,288 - -2.8
797,300 + -0.5
797,301 + -1.1
797,319 - +0.7
797,321 - -0.4
797,356 + +0.6
797,360 - +1.7
797,361 - -2.5
797,376 - -2.2
797,377 + -0.4
797,389 - -0.3
797,408 + +1.3
797,413 - -1.1
797,415 + -1.4
797,424 + +1.1
797,714 - +0.9
797,863 - -0.6
797,872 - +0.1
797,890 + -0.1
798,027 + 16631 mRNA_8263 0.13 +0.4
798,299 - 16631 mRNA_8263 0.22 +0.0
798,593 - 16631 mRNA_8263 0.33 -0.6
798,847 + 16631 mRNA_8263 0.41 -0.9
799,171 - 16631 mRNA_8263 0.52 -0.6
799,718 + 16631 mRNA_8263 0.71 -0.8
800,021 - 16631 mRNA_8263 0.82 -0.8
800,035 + 16631 mRNA_8263 0.82 +0.0
800,188 + 16631 mRNA_8263 0.87 +0.2
800,300 - -0.4
800,626 - +0.1
800,648 + +0.9
801,024 + 16632 mRNA_8264 0.12 +0.8
801,195 + 16632 mRNA_8264 0.24 -0.5
801,226 - 16632 mRNA_8264 0.26 +4.0

Or see this region's nucleotide sequence