Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8302

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16669 and 16670 are separated by 204 nucleotides mRNA_8301: 16669 - K20361 USO1 intracellular protein transport protein USO1, at 882,227 to 887,090 16669 mRNA_8302: 16670 - HMMPfam-Major Facilitator Superfamily-PF07690,SUPERFAMILY--SSF103473, at 887,295 to 889,058 16670

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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886,821 + -0.1
886,958 - +0.7
886,961 + -1.3
887,112 + +3.6
887,220 - +0.9
887,236 - +0.2
887,236 - +0.1
887,269 + +0.4
887,275 + +1.0
887,401 + -0.3
887,414 + -2.1
887,414 + +0.5
887,416 - +0.6
887,541 + 16670 mRNA_8302 0.14 +0.4
887,543 - 16670 mRNA_8302 0.14 -0.4
887,545 + 16670 mRNA_8302 0.14 -1.3
887,554 + 16670 mRNA_8302 0.15 -1.8
887,567 - 16670 mRNA_8302 0.15 +1.3
888,433 - 16670 mRNA_8302 0.65 +0.9
888,578 + 16670 mRNA_8302 0.73 +0.1
888,675 - 16670 mRNA_8302 0.78 -1.2
888,687 + 16670 mRNA_8302 0.79 -0.3
889,107 - -0.8
889,306 - -0.4
889,306 + -0.5
889,450 + +0.3
889,568 + +0.8

Or see this region's nucleotide sequence