Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8330

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16697 and 16698 are separated by 65 nucleotides mRNA_8329: 16697 - KOG0527 HMG-box transcription factor, at 950,835 to 951,817 16697 mRNA_8330: 16698 - BLAST clp1-like protein [Schizophyllum commune H4-8], at 951,883 to 952,795 16698

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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950,953 + 16697 mRNA_8329 0.12 -1.4
951,119 - 16697 mRNA_8329 0.29 -0.1
951,860 - -1.1
952,185 + 16698 mRNA_8330 0.33 -2.0
952,214 - 16698 mRNA_8330 0.36 -0.4
952,306 - 16698 mRNA_8330 0.46 +0.6
952,326 - 16698 mRNA_8330 0.49 +0.0
952,471 - 16698 mRNA_8330 0.64 -0.3
952,479 + 16698 mRNA_8330 0.65 +0.1
952,479 - 16698 mRNA_8330 0.65 -1.5
952,565 + 16698 mRNA_8330 0.75 -1.4
952,600 + 16698 mRNA_8330 0.79 -2.3
952,627 - 16698 mRNA_8330 0.81 +0.6
952,736 - -1.6
952,741 + -1.2
952,759 + -0.1
952,768 + -0.7
952,889 - +0.1
952,892 - -0.3
952,892 - -0.2
952,909 + -0.1
952,915 + +0.6
952,919 + -0.6
952,941 + +2.4
952,953 - -0.5
952,963 + +1.1
953,046 - -1.2
953,227 - -0.7
953,234 + -0.5
953,257 + +0.2
953,274 + -0.0
953,362 - -1.4
953,382 - -1.2
953,408 - +1.2
953,697 + -2.3

Or see this region's nucleotide sequence