Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8339

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16707 and 16708 are separated by 115 nucleotides mRNA_8339: 16707 - K06180 rluD 23S rRNA pseudouridine1911/1915/1917 synthase, at 972,438 to 973,571 16707 mRNA_8340: 16708 - K03254 EIF3A translation initiation factor 3 subunit A, at 973,687 to 977,357 16708

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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971,660 - +0.0
971,671 + -0.9
971,943 - +0.4
972,119 + +1.2
972,192 - -0.3
972,205 + -0.1
972,232 - -0.3
972,252 - +0.0
972,283 - +1.7
972,296 + +0.1
972,371 + -3.9
972,384 - -0.1
972,568 + 16707 mRNA_8339 0.11 +2.3
972,684 + 16707 mRNA_8339 0.22 -0.0
972,711 + 16707 mRNA_8339 0.24 -0.0
972,715 + 16707 mRNA_8339 0.24 -0.5
972,717 + 16707 mRNA_8339 0.25 +2.4
972,719 + 16707 mRNA_8339 0.25 +0.6
972,725 + 16707 mRNA_8339 0.25 +1.0
972,838 + 16707 mRNA_8339 0.35 +0.2
972,891 + 16707 mRNA_8339 0.40 -0.1
973,193 + 16707 mRNA_8339 0.67 -1.6
973,194 - 16707 mRNA_8339 0.67 +1.5
973,195 - 16707 mRNA_8339 0.67 +0.5
973,461 - +0.5
973,461 - -0.5
973,489 + -1.2
973,620 - -0.5
973,626 + +0.5
973,635 + -1.2
973,638 - -1.5
973,640 + -2.2
973,648 + -0.0
973,653 - -1.4
973,658 + +0.5

Or see this region's nucleotide sequence