Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8348

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16714 and 16715 are separated by 348 nucleotides16715 and 16716 overlap by 2 nucleotides16716 and 16717 are separated by 692 nucleotides mRNA_8346: 16714 - Hypothetical Protein, at 991,012 to 994,561 16714 mRNA_8347: 16715 - Hypothetical Protein, at 994,910 to 995,448 16715 mRNA_8348: 16716 - K05349 bglX beta-glucosidase, at 995,447 to 998,474 16716 mRNA_8349: 16717 - K05349 bglX beta-glucosidase, at 999,167 to 1,002,495 16717

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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994,626 - -2.6
994,652 - -1.9
994,653 - +1.4
994,661 - +0.5
994,662 + +0.7
994,677 + +0.1
994,684 + +1.2
994,808 + -0.0
994,811 - +0.9
994,818 - -0.5
994,823 - -0.8
994,840 - +0.2
994,925 - +0.3
994,929 - +0.2
994,930 - -0.8
994,933 - +0.3
994,936 - +0.0
994,939 + -0.5
994,940 + -0.3
994,948 + -0.0
994,948 - -1.2
994,949 + +0.5
994,961 + -0.9
994,967 + 16715 mRNA_8347 0.11 +0.3
994,972 - 16715 mRNA_8347 0.12 +1.6
994,973 - 16715 mRNA_8347 0.12 -0.8
994,975 - 16715 mRNA_8347 0.12 +0.4
994,978 + 16715 mRNA_8347 0.13 -0.0
995,029 - 16715 mRNA_8347 0.22 +0.7
995,048 + 16715 mRNA_8347 0.26 -2.1
995,071 - 16715 mRNA_8347 0.30 +0.1
995,073 - 16715 mRNA_8347 0.30 +0.4
995,089 + 16715 mRNA_8347 0.33 +1.2
995,090 + 16715 mRNA_8347 0.33 -0.7
995,102 + 16715 mRNA_8347 0.36 -0.8
995,121 + 16715 mRNA_8347 0.39 -2.0
995,136 + 16715 mRNA_8347 0.42 +0.5
995,140 - 16715 mRNA_8347 0.43 +0.2
995,146 - 16715 mRNA_8347 0.44 -0.2
995,147 + 16715 mRNA_8347 0.44 -0.2
995,154 - 16715 mRNA_8347 0.45 +0.1
995,155 + 16715 mRNA_8347 0.45 -0.5
995,161 - 16715 mRNA_8347 0.47 -2.0
995,168 - 16715 mRNA_8347 0.48 +0.4
995,176 + 16715 mRNA_8347 0.49 +1.7
995,179 - 16715 mRNA_8347 0.50 +0.9
995,194 - 16715 mRNA_8347 0.53 -0.2
995,196 + 16715 mRNA_8347 0.53 -1.6
995,207 - 16715 mRNA_8347 0.55 -0.8
995,208 + 16715 mRNA_8347 0.55 -2.6
995,215 + 16715 mRNA_8347 0.57 +1.1
995,221 + 16715 mRNA_8347 0.58 +0.1
995,222 + 16715 mRNA_8347 0.58 +1.5
995,238 - 16715 mRNA_8347 0.61 -0.3
995,267 + 16715 mRNA_8347 0.66 +0.3
995,283 - 16715 mRNA_8347 0.69 -0.8
995,293 + 16715 mRNA_8347 0.71 -0.5
995,301 - 16715 mRNA_8347 0.73 -0.8
995,307 - 16715 mRNA_8347 0.74 +1.6
995,308 - 16715 mRNA_8347 0.74 +0.2
995,310 - 16715 mRNA_8347 0.74 +0.9
995,314 - 16715 mRNA_8347 0.75 +0.4
995,316 - 16715 mRNA_8347 0.75 -1.6
995,329 - 16715 mRNA_8347 0.78 +0.7
995,339 - 16715 mRNA_8347 0.80 +0.4
995,350 - 16715 mRNA_8347 0.82 +2.2
995,352 + 16715 mRNA_8347 0.82 +0.1
995,353 - 16715 mRNA_8347 0.82 +0.4
995,354 + 16715 mRNA_8347 0.82 -1.9
995,370 - 16715 mRNA_8347 0.85 -0.4
995,373 + 16715 mRNA_8347 0.86 +0.5
995,373 - 16715 mRNA_8347 0.86 -0.0
995,376 + 16715 mRNA_8347 0.86 +1.2
995,376 + 16715 mRNA_8347 0.86 -1.9
995,444 - +0.8
995,465 - -1.6
995,487 - +1.9
995,548 + -0.8
995,560 - +0.2
996,268 + 16716 mRNA_8348 0.27 +0.9
996,295 - 16716 mRNA_8348 0.28 -0.7
996,702 + 16716 mRNA_8348 0.41 +0.0
997,097 - 16716 mRNA_8348 0.54 +0.5
997,300 + 16716 mRNA_8348 0.61 -1.9
998,160 + 16716 mRNA_8348 0.90 -4.1
998,191 + -3.0
998,323 + -0.6
998,335 - -0.6
998,354 + -0.3
998,422 - +3.0
998,423 - +2.2
998,429 + +0.6
998,443 + +0.2
998,472 + +2.5
998,472 - -0.2
998,481 + +0.3
998,498 - -1.2
998,500 + -0.2
998,515 + -0.1
998,524 - -0.4
998,579 - +2.2
998,594 - -0.9
998,600 - +1.2
998,615 + +0.3
998,630 + +0.1
998,633 - -1.0
998,641 - -0.2
998,643 + -1.8
998,657 - +0.6
998,659 - +1.1
998,663 + +0.9
998,698 - -0.1
998,705 - +1.0
998,724 - +0.2
998,745 - +0.5
998,751 - -0.9
998,754 - +1.9
998,755 - +0.4
998,756 + +0.6
998,763 - -0.4
998,767 - +0.9
998,770 - -0.2
998,771 - +0.7
998,773 + +0.5
998,786 + +0.7
998,786 - -0.0
998,788 - -0.1
998,792 - +0.6
998,797 - -1.0
998,801 - -0.4
998,802 - +0.5
998,804 - -1.0
998,810 + +0.2
998,810 + -1.1
998,814 + -0.6
998,817 + +0.1
998,830 - +0.3
998,842 - +0.6
998,845 + -0.3
998,861 + -0.5
998,867 + -0.2
998,880 - -1.1
998,881 + -0.8
998,935 - +0.5
998,940 - +1.9
998,940 - +1.5
998,940 + +0.2
998,968 - +0.3
998,995 + +0.3
999,009 - +0.8
999,038 - -0.2
999,041 - +0.9
999,049 + +0.7
999,061 + +0.1
999,074 + -0.5
999,078 + +2.2
999,090 - +0.4
999,109 + -0.4
999,127 + -0.9

Or see this region's nucleotide sequence