Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8379

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16747 and 16748 are separated by 52 nucleotides mRNA_8379: 16747 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 1,072,977 to 1,073,638 16747 mRNA_8380: 16748 - KOG4197 FOG PPR repeat, at 1,073,691 to 1,078,543 16748

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,072,262 - -0.0
1,072,270 - -0.4
1,072,403 + -1.9
1,072,403 + -0.4
1,072,410 - +0.8
1,072,411 - -0.3
1,072,414 - -0.4
1,072,415 + +1.8
1,072,537 + +0.1
1,073,695 + +0.6
1,073,705 + -0.3
1,073,723 + -0.5
1,073,734 - -2.0
1,073,825 + -0.0
1,073,877 - -0.0
1,073,886 + +0.0
1,073,931 + -3.0

Or see this region's nucleotide sequence