Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8395

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16762 and 16763 are separated by 105 nucleotides16763 and 16764 are separated by 729 nucleotides mRNA_8394: 16762 - KOG3680 Uncharacterized conserved protein, at 1,114,553 to 1,119,513 16762 mRNA_8395: 16763 - SUPERFAMILY--SSF52047, at 1,119,619 to 1,120,614 16763 mRNA_8396: 16764 - HMMPfam-Ribosomal protein S8-PF00410,SUPERFAMILY--SSF56047, at 1,121,344 to 1,121,811 16764

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
1,118,643 + 16762 mRNA_8394 0.82 -0.6
1,118,710 - 16762 mRNA_8394 0.84 +1.9
1,118,714 + 16762 mRNA_8394 0.84 +0.3
1,118,726 + 16762 mRNA_8394 0.84 -2.9
1,118,882 - 16762 mRNA_8394 0.87 +2.0
1,119,037 + +0.3
1,119,132 + -2.1
1,119,133 + -1.3
1,119,148 + +0.8
1,119,305 - +2.5
1,119,305 - +1.6
1,119,314 + +1.1
1,119,389 - +1.0
1,119,511 + -0.5
1,119,565 + -0.1
1,119,596 + -0.4
1,119,753 + 16763 mRNA_8395 0.13 +1.9
1,119,926 + 16763 mRNA_8395 0.31 -0.1
1,120,219 - 16763 mRNA_8395 0.60 +1.1
1,120,351 + 16763 mRNA_8395 0.73 +1.6
1,120,453 - 16763 mRNA_8395 0.84 +0.4
1,120,748 - -0.4
1,120,776 - +0.7
1,120,787 + +0.5
1,120,789 + +0.1
1,120,944 + +1.4
1,121,062 - -1.0
1,121,219 - -0.2
1,121,227 + -0.1
1,121,228 + +0.6

Or see this region's nucleotide sequence