Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8405

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16772 and 16773 are separated by 189 nucleotides16773 and 16774 are separated by 506 nucleotides mRNA_8404: 16772 - Hypothetical Protein, at 1,139,577 to 1,141,043 16772 mRNA_8405: 16773 - K11341 YEATS4, GAS41, YAF9 YEATS domain-containing protein 4, at 1,141,233 to 1,142,255 16773 mRNA_8406: 16774 - K06883 K06883 uncharacterized protein, at 1,142,762 to 1,144,384 16774

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,140,529 + 16772 mRNA_8404 0.65 +1.1
1,140,928 + +1.2
1,141,094 - +0.0
1,141,111 + -1.7
1,142,430 + +0.6

Or see this region's nucleotide sequence