Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8450

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16818 and 16819 are separated by 139 nucleotides mRNA_8450: 16818 - K06670 SCC1, MCD1, RAD21 cohesin complex subunit SCC1, at 1,264,396 to 1,266,785 16818 mRNA_8451: 16819 - Hypothetical Protein, at 1,266,925 to 1,267,155 16819

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,263,466 - +1.9
1,263,652 + +0.7
1,263,668 - +0.6
1,263,764 - -0.5
1,263,767 + -0.3
1,263,769 - -0.7
1,263,770 + -1.0
1,263,771 - -0.3
1,263,773 + -0.0
1,263,777 + +0.8
1,263,927 - -0.7
1,263,927 - +0.8
1,263,958 - +0.7
1,263,986 - +0.3
1,264,240 + -1.1
1,267,421 - -0.9
1,267,425 - -1.6
1,267,427 + -0.0
1,267,433 - +0.2
1,267,435 - +0.2
1,267,444 + +0.8
1,267,461 + +0.7
1,267,463 - -0.3
1,267,465 - -0.4
1,267,466 - -1.1
1,267,468 + +0.5
1,267,474 + -0.5
1,267,493 + +0.0
1,267,591 + +1.2
1,267,600 - +1.4
1,267,723 + +0.2
1,267,725 + -0.5
1,267,731 - -0.9

Or see this region's nucleotide sequence