Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8457

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16825 and 16826 are separated by 893 nucleotides mRNA_8457: 16825 - K02728 PSMA4 20S proteasome subunit alpha 3, at 1,280,934 to 1,282,715 16825 mRNA_8458: 16826 - Hypothetical Protein, at 1,283,609 to 1,284,091 16826

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,279,946 + -0.6
1,279,989 - +0.8
1,279,998 - -0.2
1,280,005 + +0.7
1,280,007 + +0.6
1,280,018 + +1.4
1,280,019 + -0.2
1,280,029 - +0.7
1,280,042 + +0.6
1,280,045 - -0.6
1,280,254 - +1.1
1,280,346 + +0.8
1,280,414 - -1.9
1,280,443 - +0.2
1,280,494 + +1.8
1,280,501 + +0.0
1,280,562 + -0.3
1,280,563 - +0.4
1,280,759 - +0.3
1,280,760 + -1.7
1,280,778 + +0.2
1,280,877 - +0.8
1,280,880 + -0.7
1,280,880 + +0.7
1,280,881 + +1.2
1,280,881 + +0.7
1,280,891 + +0.0
1,280,896 + +0.8
1,280,907 - +0.9
1,280,909 + -0.3
1,280,909 + +0.7
1,281,180 + 16825 mRNA_8457 0.14 -0.5
1,281,189 + 16825 mRNA_8457 0.14 -0.6
1,281,330 + 16825 mRNA_8457 0.22 -2.1
1,281,482 - 16825 mRNA_8457 0.31 -0.9
1,282,251 - 16825 mRNA_8457 0.74 -3.0
1,282,522 + 16825 mRNA_8457 0.89 -1.6
1,282,775 + +1.0
1,282,833 + +1.7
1,282,854 - +1.7
1,282,955 - +0.1
1,282,973 - -0.0
1,283,063 + -0.2
1,283,090 - +0.3
1,283,122 + +1.8
1,283,132 + +0.9
1,283,134 + -1.4
1,283,233 + +2.3
1,283,252 - -0.7
1,283,391 - +1.8
1,283,412 + +0.6
1,283,425 + -0.0
1,283,445 - +0.4
1,283,452 - +1.3
1,283,452 - -0.1
1,283,453 + +0.0
1,283,578 + +0.1
1,283,593 - +0.4
1,283,601 - -0.3
1,283,603 - +1.1
1,283,607 + +0.6
1,283,645 - -0.2

Or see this region's nucleotide sequence