Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8460

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16828 and 16829 are separated by 305 nucleotides mRNA_8460: 16828 - KOG0527 HMG-box transcription factor, at 1,287,256 to 1,290,060 16828 mRNA_8461: 16829 - BLAST Copper radical oxidase [Trametes cinnabarina], at 1,290,366 to 1,291,802 16829

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,286,263 - -0.2
1,286,278 + +0.6
1,286,388 - +0.8
1,286,391 - -0.3
1,286,417 - +0.9
1,286,513 + -1.2
1,286,547 - +1.3
1,286,569 - -0.1
1,286,692 + +0.5
1,286,813 - -0.1
1,286,829 - -0.8
1,286,847 - -0.0
1,286,851 + +0.4
1,286,870 + -1.1
1,286,876 + -0.4
1,286,881 - +0.2
1,286,882 + -0.1
1,286,895 + -0.0
1,286,903 + +0.4
1,286,903 + -0.6
1,286,908 + +1.7
1,286,980 - -1.4
1,286,996 - -0.1
1,287,025 + -1.9
1,287,174 + -0.1
1,287,204 + -0.2
1,287,204 + -0.5
1,287,238 + -1.2
1,287,488 + -0.6
1,287,648 + 16828 mRNA_8460 0.14 +0.5
1,287,734 - 16828 mRNA_8460 0.17 -1.0
1,287,769 + 16828 mRNA_8460 0.18 -0.0
1,287,910 - 16828 mRNA_8460 0.23 -1.9
1,287,910 - 16828 mRNA_8460 0.23 +3.6
1,288,206 - 16828 mRNA_8460 0.34 +0.3
1,288,209 - 16828 mRNA_8460 0.34 +0.4
1,288,403 + 16828 mRNA_8460 0.41 +1.3
1,288,537 - 16828 mRNA_8460 0.46 -2.9
1,288,568 + 16828 mRNA_8460 0.47 +0.5
1,288,639 + 16828 mRNA_8460 0.49 -0.2
1,288,725 + 16828 mRNA_8460 0.52 +0.8
1,288,802 - 16828 mRNA_8460 0.55 +0.8
1,289,479 + 16828 mRNA_8460 0.79 +0.5
1,289,589 + 16828 mRNA_8460 0.83 +0.5
1,289,670 - 16828 mRNA_8460 0.86 +0.5
1,290,149 - -0.8
1,290,164 - +1.7
1,290,357 - +0.2
1,290,376 + -0.1
1,290,440 - +0.4
1,290,512 + 16829 mRNA_8461 0.10 -0.1
1,290,615 + 16829 mRNA_8461 0.17 +0.4
1,290,794 - 16829 mRNA_8461 0.30 +0.7
1,290,814 - 16829 mRNA_8461 0.31 -1.6
1,291,022 - 16829 mRNA_8461 0.46 +0.1
1,291,025 + 16829 mRNA_8461 0.46 -0.3
1,291,049 + 16829 mRNA_8461 0.48 +0.6

Or see this region's nucleotide sequence