Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8467

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16834 and 16835 are separated by 257 nucleotides16835 and 16836 are separated by 313 nucleotides mRNA_8466: 16834 - KOG2112 Lysophospholipase, at 1,302,209 to 1,303,351 16834 mRNA_8467: 16835 - Hypothetical Protein, at 1,303,609 to 1,304,454 16835 mRNA_8468: 16836 - K00131 gapN glyceraldehyde-3-phosphate dehydrogenase (NADP+), at 1,304,768 to 1,306,783 16836

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,303,078 - 16834 mRNA_8466 0.76 +0.3
1,303,088 - 16834 mRNA_8466 0.77 -1.8
1,303,204 - 16834 mRNA_8466 0.87 +0.8
1,303,361 + +1.4
1,303,645 + +0.4
1,303,781 - 16835 mRNA_8467 0.20 -0.2
1,303,953 - 16835 mRNA_8467 0.41 +1.7
1,304,109 - 16835 mRNA_8467 0.59 -0.3
1,304,594 - +0.6
1,304,607 + +0.5
1,304,723 + -1.2
1,304,808 - -0.6
1,304,824 + +1.5
1,304,954 - -1.9
1,305,222 - 16836 mRNA_8468 0.23 +1.4
1,305,276 + 16836 mRNA_8468 0.25 +0.2
1,305,435 - 16836 mRNA_8468 0.33 +0.8

Or see this region's nucleotide sequence