Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_26

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8393 and 8394 are separated by 561 nucleotides8394 and 8395 are separated by 449 nucleotides mRNA_25: 8393 - Hypothetical Protein, at 66,506 to 67,548 8393 mRNA_26: 8394 - K04499 RUVBL1, RVB1, INO80H RuvB-like protein 1 (pontin 52), at 68,110 to 69,853 8394 mRNA_27: 8395 - K00088 IMPDH, guaB IMP dehydrogenase, at 70,303 to 72,461 8395

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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67,356 + 8393 mRNA_25 0.81 +1.1
67,387 + 8393 mRNA_25 0.84 +1.3
67,838 - -0.4
68,115 + +0.2
68,125 - -1.0
70,040 + +1.3
70,172 + -0.4
70,173 - +0.5

Or see this region's nucleotide sequence