Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_30

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8397 and 8398 are separated by 247 nucleotides8398 and 8399 are separated by 84 nucleotides mRNA_29: 8397 - HMMPfam-Swi5-PF07061, at 74,095 to 74,821 8397 mRNA_30: 8398 - KOG2798 Putative trehalase, at 75,069 to 76,780 8398 mRNA_31: 8399 - K01520 dut, DUT dUTP pyrophosphatase, at 76,865 to 77,832 8399

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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74,251 - 8397 mRNA_29 0.21 +1.2
74,281 + 8397 mRNA_29 0.26 +0.5
74,285 - 8397 mRNA_29 0.26 -0.5
74,296 + 8397 mRNA_29 0.28 +0.4
74,309 + 8397 mRNA_29 0.29 -0.0
74,320 - 8397 mRNA_29 0.31 -0.3
74,326 + 8397 mRNA_29 0.32 -0.7
74,586 + 8397 mRNA_29 0.68 +0.5
74,735 - 8397 mRNA_29 0.88 +0.4
74,756 + +0.5
75,229 - +0.6
75,360 - 8398 mRNA_30 0.17 -0.0
75,482 - 8398 mRNA_30 0.24 -0.5
75,957 - 8398 mRNA_30 0.52 +1.3
76,059 - 8398 mRNA_30 0.58 -0.2
76,215 + 8398 mRNA_30 0.67 -0.6
76,286 - 8398 mRNA_30 0.71 -1.7
76,460 - 8398 mRNA_30 0.81 -1.1
76,462 + 8398 mRNA_30 0.81 -0.3
76,521 - 8398 mRNA_30 0.85 -0.6
76,540 + 8398 mRNA_30 0.86 +1.0
76,598 - 8398 mRNA_30 0.89 -2.4
76,799 - +0.7
76,813 + +0.6
76,921 + +0.1
76,931 + -0.1
76,952 - +0.5

Or see this region's nucleotide sequence