Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_39

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8406 and 8407 are separated by 428 nucleotides8407 and 8408 are separated by 368 nucleotides mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93,493 to 94,436 8406 mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94,865 to 95,759 8407 mRNA_40: 8408 - Hypothetical Protein, at 96,128 to 97,227 8408

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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93,961 + 8406 mRNA_38 0.50 -0.2
93,965 - 8406 mRNA_38 0.50 -0.1
94,027 + 8406 mRNA_38 0.57 +0.1
94,084 - 8406 mRNA_38 0.63 -0.8
94,169 - 8406 mRNA_38 0.72 +0.1
94,285 + 8406 mRNA_38 0.84 +0.1
94,288 - 8406 mRNA_38 0.84 -0.1
94,288 - 8406 mRNA_38 0.84 -1.1
94,445 + -0.3
94,491 + +0.8
94,515 - +1.6
94,534 - -0.0
94,631 - +0.4
94,635 - +0.8
94,683 - +1.4
94,686 - +1.0
94,687 + +1.5
94,687 + +1.5
94,800 + +0.9
94,800 + +0.0
94,803 - +0.4
94,803 - -1.5
94,803 - +0.3
94,890 + +1.8
94,917 + -0.7
94,917 - +0.9
94,943 + -1.5
94,975 + 8407 mRNA_39 0.12 +0.7
94,980 + 8407 mRNA_39 0.13 +0.2
94,993 + 8407 mRNA_39 0.14 -0.4
95,108 + 8407 mRNA_39 0.27 -0.3
95,126 - 8407 mRNA_39 0.29 +2.3
95,176 - 8407 mRNA_39 0.35 -0.1
95,240 - 8407 mRNA_39 0.42 +1.9
95,274 - 8407 mRNA_39 0.46 -1.7
95,475 - 8407 mRNA_39 0.68 +1.3
95,528 - 8407 mRNA_39 0.74 +1.8
95,566 - 8407 mRNA_39 0.78 +0.6
95,645 - 8407 mRNA_39 0.87 -0.5
95,648 + 8407 mRNA_39 0.87 +0.1
95,650 - 8407 mRNA_39 0.88 +0.7
95,707 + +0.3
95,713 - +1.6
95,750 + +1.4
95,770 + +0.1
95,809 - -0.6
95,818 - -3.4
95,823 + +0.1
96,060 + +0.1
96,091 - +0.7
96,091 + -1.5
96,109 + -0.6
96,270 - 8408 mRNA_40 0.13 -2.7
96,357 - 8408 mRNA_40 0.21 +0.0
96,366 + 8408 mRNA_40 0.22 -0.4
96,378 + 8408 mRNA_40 0.23 -0.6
96,410 - 8408 mRNA_40 0.26 -1.2
96,462 + 8408 mRNA_40 0.30 +0.5
96,560 + 8408 mRNA_40 0.39 +0.6
96,621 - 8408 mRNA_40 0.45 +1.3
96,674 - 8408 mRNA_40 0.50 -0.7
96,754 - 8408 mRNA_40 0.57 +0.3

Or see this region's nucleotide sequence