Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_42

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8409 and 8410 are separated by 199 nucleotides8410 and 8411 are separated by 191 nucleotides mRNA_41: 8409 - K03125 TAF1 transcription initiation factor TFIID subunit 1, at 97,555 to 101,757 8409 mRNA_42: 8410 - K09494 CCT2 T-complex protein 1 subunit beta, at 101,957 to 104,570 8410 mRNA_43: 8411 - K05609 UCHL3, YUH1 ubiquitin carboxyl-terminal hydrolase L3, at 104,762 to 105,972 8411

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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101,696 - -2.0
104,618 - +1.3
104,620 - +1.5
104,625 - +1.5
104,628 + +1.0
104,631 - +0.4
104,819 + +0.3
104,833 + -2.2
104,833 + +0.2
104,833 + +1.1
104,833 + +0.2
104,836 - +0.9
104,837 + +0.7
104,918 - 8411 mRNA_43 0.13 -2.2
104,941 + 8411 mRNA_43 0.15 +1.1
105,039 - 8411 mRNA_43 0.23 +1.1
105,079 - 8411 mRNA_43 0.26 -0.8
105,356 + 8411 mRNA_43 0.49 -0.4
105,361 + 8411 mRNA_43 0.49 -1.0
105,563 + 8411 mRNA_43 0.66 +1.7

Or see this region's nucleotide sequence