Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_65

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8432 and 8433 are separated by 147 nucleotides8433 and 8434 are separated by 88 nucleotides mRNA_64: 8432 - HMMPfam-Transcription initiation factor TFIID component TAF4 family-PF05236, at 148,573 to 150,625 8432 mRNA_65: 8433 - K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1, at 150,773 to 154,577 8433 mRNA_66: 8434 - K15118 SLC25A38 solute carrier family 25, member 38, at 154,666 to 156,000 8434

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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150,642 - +1.1
150,829 - -1.6
150,968 - -0.7
151,142 - -0.9
152,610 - 8433 mRNA_65 0.48 +0.1
152,771 + 8433 mRNA_65 0.53 -1.6
153,025 + 8433 mRNA_65 0.59 +0.4
153,880 - 8433 mRNA_65 0.82 -0.6
154,127 + 8433 mRNA_65 0.88 -0.8
154,469 + +2.0
154,529 + -0.6
154,555 + -1.1
154,618 - +0.5
155,507 + 8434 mRNA_66 0.63 -0.9
155,513 - 8434 mRNA_66 0.63 +1.8
155,516 + 8434 mRNA_66 0.64 -1.0

Or see this region's nucleotide sequence