Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_95

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8462 and 8463 are separated by 905 nucleotides8463 and 8464 are separated by 119 nucleotides mRNA_94: 8462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 221,579 to 223,787 8462 mRNA_95: 8463 - K14408 CSTF3, RNA14 cleavage stimulation factor subunit 3, at 224,693 to 228,325 8463 mRNA_96: 8464 - KOG4031 Vesicle coat protein clathrin, light chain, at 228,445 to 229,589 8464

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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223,938 - +0.3
223,947 + -0.3
223,958 - +0.7
223,972 - -0.4
223,985 + -0.9
223,989 + -0.9
223,991 + -1.7
223,993 + +2.1
223,999 - +0.1
224,011 - +0.4
224,011 - -1.5
224,032 - +0.8
224,035 + -0.7
224,084 - +0.4
224,099 + +0.6
224,105 + +0.3
224,111 + +0.6
224,145 - -1.0
224,232 + -1.2
224,240 + +0.7
224,254 - +1.9
224,268 + -2.6
224,275 - -0.8
224,279 + +1.3
224,284 - -1.1
224,296 + +0.4
224,332 - +0.6
224,334 - +0.4
224,339 + +0.0
224,348 - +2.1
224,356 + +0.7
224,356 - -1.1
224,359 + +0.0
224,361 + +0.3
224,362 + -1.7
224,365 - -0.3
224,369 + -0.6
224,369 + +0.5
224,376 - -2.1
224,381 - -1.1
224,383 + +0.2
224,387 + +1.8
224,387 + -0.5
224,393 - +1.2
224,410 - +0.4
224,413 + -0.8
224,448 - +1.4
224,451 + +0.9
224,451 - -2.1
224,453 + -0.2
224,456 + -0.7
224,456 + +0.5
224,458 - +0.4
224,488 + +2.2
224,614 + +0.6
224,720 + -0.4
228,247 + +0.6
228,382 - -0.5
228,399 - -0.4
228,413 - +0.1

Or see this region's nucleotide sequence