Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_109

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8476 and 8477 are separated by 108 nucleotides8477 and 8478 are separated by 267 nucleotides mRNA_108: 8476 - Hypothetical Protein, at 258,330 to 258,956 8476 mRNA_109: 8477 - Hypothetical Protein, at 259,065 to 259,869 8477 mRNA_110: 8478 - KOG3399 Predicted Yippee-type zinc-binding protein, at 260,137 to 260,817 8478

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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259,287 - 8477 mRNA_109 0.28 +2.2
259,765 + 8477 mRNA_109 0.87 +0.9
259,910 - +2.3
259,917 - +3.3
259,955 + -0.1
259,992 - +0.4
260,130 + -1.4
260,258 + 8478 mRNA_110 0.18 +1.8
260,272 - 8478 mRNA_110 0.20 +1.5
260,309 + 8478 mRNA_110 0.25 +0.7
260,420 + 8478 mRNA_110 0.42 +0.5
260,424 + 8478 mRNA_110 0.42 +1.1
260,436 - 8478 mRNA_110 0.44 -1.1
260,752 + +1.9

Or see this region's nucleotide sequence