Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_130

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8497 and 8498 are separated by 90 nucleotides8498 and 8499 are separated by 186 nucleotides mRNA_129: 8497 - SUPERFAMILY--SSF56112, at 312,995 to 315,210 8497 mRNA_130: 8498 - BLAST 60S ribosomal protein L18-B [Termitomyces sp. J132], at 315,301 to 316,369 8498 mRNA_131: 8499 - K11092 SNRPA1 U2 small nuclear ribonucleoprotein A', at 316,556 to 317,725 8499

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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315,038 + -0.8
315,182 + +0.3
315,207 - +1.9
316,381 + +1.1
316,420 + +0.1
316,688 - 8499 mRNA_131 0.11 +1.0
316,931 + 8499 mRNA_131 0.32 -0.3

Or see this region's nucleotide sequence