Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_138

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8505 and 8506 are separated by 312 nucleotides8506 and 8507 are separated by 323 nucleotides mRNA_137: 8505 - SUPERFAMILY--SSF53474, at 328,204 to 331,764 8505 mRNA_138: 8506 - KOG4473 Uncharacterized membrane protein, at 332,077 to 333,617 8506 mRNA_139: 8507 - K14538 NUG1, GNL3 nuclear GTP-binding protein, at 333,941 to 336,511 8507

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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331,237 + 8505 mRNA_137 0.85 +0.7
331,250 - 8505 mRNA_137 0.86 +0.1
331,321 + 8505 mRNA_137 0.88 +2.4
331,637 - -1.2
331,815 - -0.7
331,821 + -2.0
331,832 + -0.3
331,963 + +0.2
331,979 - +0.3
331,990 + -2.2
332,001 + +0.0
332,011 + +0.1
332,137 - -3.3
332,158 + +0.7
332,446 - 8506 mRNA_138 0.24 +0.9
332,447 + 8506 mRNA_138 0.24 -0.9
332,450 + 8506 mRNA_138 0.24 -1.9
332,692 - 8506 mRNA_138 0.40 +0.4
332,758 + 8506 mRNA_138 0.44 -1.1
333,228 - 8506 mRNA_138 0.75 -0.8
333,619 + +0.4
333,769 + -0.1
333,818 + +0.9
334,024 - -1.0
334,539 - 8507 mRNA_139 0.23 -0.7

Or see this region's nucleotide sequence