Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_171

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8538 and 8539 are separated by 161 nucleotides8539 and 8540 are separated by 499 nucleotides mRNA_170: 8538 - K12179 COPS6, CSN6 COP9 signalosome complex subunit 6, at 417,604 to 419,070 8538 mRNA_171: 8539 - K03237 EIF2S1 translation initiation factor 2 subunit 1, at 419,232 to 420,600 8539 mRNA_172: 8540 - K14264 BNA3 kynurenine aminotransferase, at 421,100 to 422,861 8540

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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418,536 + 8538 mRNA_170 0.64 -0.3
418,650 - 8538 mRNA_170 0.71 -0.1
418,672 + 8538 mRNA_170 0.73 -0.7
418,696 + 8538 mRNA_170 0.74 +4.2
418,827 - 8538 mRNA_170 0.83 -1.3
418,837 + 8538 mRNA_170 0.84 -3.8
418,838 - 8538 mRNA_170 0.84 -2.9
419,130 - +0.3
419,133 + +0.5
420,603 + -0.7
420,752 - +0.2
420,908 - +0.0
420,917 + +0.1
421,060 + +0.1
421,356 - 8540 mRNA_172 0.15 -1.6
421,367 + 8540 mRNA_172 0.15 -1.1
421,503 + 8540 mRNA_172 0.23 +0.3

Or see this region's nucleotide sequence