Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_267

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8634 and 8635 are separated by 345 nucleotides8635 and 8636 are separated by 253 nucleotides mRNA_266: 8634 - KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, at 639,859 to 640,522 8634 mRNA_267: 8635 - K03381 catA catechol 1,2-dioxygenase, at 640,868 to 642,235 8635 mRNA_268: 8636 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 642,489 to 643,919 8636

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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639,879 - +0.0
640,023 - 8634 mRNA_266 0.25 -1.8
640,581 - -0.8
640,584 + +2.0
640,589 - +0.8
640,598 + -0.6
641,347 + 8635 mRNA_267 0.35 -0.4
641,430 + 8635 mRNA_267 0.41 -1.3
641,868 + 8635 mRNA_267 0.73 +1.3
642,177 + +0.8
642,303 + -1.1
642,319 - +1.2
642,355 + +0.4
642,419 - +1.1
642,422 + +2.6
642,423 + -2.1
642,427 - +1.2
642,432 + -1.3
642,432 + +0.4
642,581 - -0.2
642,926 + 8636 mRNA_268 0.31 +0.7
643,064 + 8636 mRNA_268 0.40 +1.0

Or see this region's nucleotide sequence