Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_272

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8639 and 8640 are separated by 531 nucleotides8640 and 8641 are separated by 380 nucleotides mRNA_271: 8639 - K11262 ACACA acetyl-CoA carboxylase / biotin carboxylase 1, at 646,438 to 653,784 8639 mRNA_272: 8640 - KOG4178 Soluble epoxide hydrolase, at 654,316 to 655,397 8640 mRNA_273: 8641 - K15174 PAF1 RNA polymerase II-associated factor 1, at 655,778 to 657,591 8641

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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653,818 + +2.2
653,832 - -1.0
653,978 - +0.1
654,012 + -2.0
654,080 - +0.9
654,087 + -0.1
654,087 + -0.4
654,109 - -1.4
654,115 + -0.7
654,125 + +1.0
654,125 + +1.3
654,131 - +0.3
654,172 - -0.1
654,248 - -0.5
654,339 - -1.6
654,421 - +0.3
654,521 + 8640 mRNA_272 0.19 +0.7
654,550 - 8640 mRNA_272 0.22 +1.5
654,863 - 8640 mRNA_272 0.51 -1.1
655,441 - +0.9
655,580 + +0.5
655,583 + -1.1
655,586 - +2.4
655,597 - +0.7
655,603 + +0.2
655,603 + +0.1
655,603 + +0.8
655,605 + +0.0
655,607 + +0.6
655,609 - -0.1
655,610 + -1.3
655,612 + -0.5
655,623 + +1.1
655,725 - -0.6
655,762 + +0.5
655,768 + +0.6
655,768 + +0.6
656,313 + 8641 mRNA_273 0.29 -2.4

Or see this region's nucleotide sequence