Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_281

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8649 and 8650 are separated by 948 nucleotides mRNA_281: 8649 - KOG0653 Cyclin B and related kinase-activating proteins, at 669,704 to 671,491 8649 mRNA_282: 8650 - Hypothetical Protein, at 672,440 to 673,215 8650

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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668,955 + -1.8
669,012 - -0.1
669,015 - +0.1
669,423 - -1.8
669,424 + +0.6
669,565 - +0.9
669,571 + +0.6
669,705 - -0.8
671,498 - +0.2
671,498 - -0.2
671,509 - +1.4
671,537 + +0.3
671,561 - +1.1
671,564 + +1.9
671,665 - +0.6
671,674 - -0.1
671,681 + +1.5
671,681 - +1.7
671,694 + -0.6
671,694 + +1.9
671,700 - +0.1
671,704 + +1.6
671,825 + +1.3
671,843 + +0.9
671,845 - +1.6
671,846 - +1.2
671,848 + +1.9
671,850 - +0.6
671,854 + +2.4
671,863 - +0.1
671,866 - +1.6
671,866 + +1.2
671,866 + +0.7
671,867 - +2.3
671,873 + +3.6
671,875 - +0.6
671,875 - +1.5
671,881 + +0.7
671,885 + +2.1
671,886 - +1.8
671,893 - +1.5
671,902 + +0.5
671,920 + +2.1
671,927 + +2.8
671,995 - -0.5
672,003 + +0.7
672,004 - -1.8
672,009 - +2.0
672,018 + +0.0
672,023 - +1.6
672,029 - +1.0
672,029 + +1.9
672,038 - -0.7
672,044 - -0.5
672,044 + +0.3
672,045 + +1.2
672,049 + +0.1
672,058 - +0.4
672,139 - +0.6
672,146 + -0.7
672,164 + +1.6
672,165 - +2.2
672,165 - +1.1
672,169 - -1.1
672,175 - +0.0
672,190 - +0.8
672,276 + -0.5
672,293 - -0.3
672,309 + -0.4
672,320 - -1.0
672,331 + +1.5
672,336 - +2.1
672,357 + +0.9
672,360 + +0.3
672,363 + -0.6
672,372 - -0.2
672,375 + +1.0
672,376 - -0.1
672,379 + +0.9
672,379 + +0.4
672,386 + +1.2
672,395 + +0.5
672,399 + -0.4
672,403 - +0.7
672,430 - -0.7
672,479 + -0.3

Or see this region's nucleotide sequence