Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_290

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8657 and 8658 are separated by 358 nucleotides8658 and 8659 are separated by 570 nucleotides mRNA_289: 8657 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 686,748 to 688,788 8657 mRNA_290: 8658 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSitePatterns-Sugar transport proteins signature 1.-PS00216,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 689,147 to 690,940 8658 mRNA_291: 8659 - K03012 RPB4, POLR2D DNA-directed RNA polymerase II subunit RPB4, at 691,511 to 692,003 8659

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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688,379 + 8657 mRNA_289 0.80 +2.5
688,810 - -4.9
688,834 + +1.2
688,844 + +1.0
688,999 + -0.1
689,568 + 8658 mRNA_290 0.23 +0.9
689,869 + 8658 mRNA_290 0.40 +1.6
690,001 + 8658 mRNA_290 0.48 +0.4
690,112 - 8658 mRNA_290 0.54 +0.4
690,750 + 8658 mRNA_290 0.89 +0.7
690,753 + 8658 mRNA_290 0.90 +0.4
691,028 + -0.2
691,042 - -0.6
691,126 - +1.2
691,131 - -3.8
691,146 + -1.7
691,293 - +0.0
691,297 - -0.0
691,302 - -0.3
691,308 - +0.7
691,313 + +0.8
691,751 + 8659 mRNA_291 0.49 +1.4

Or see this region's nucleotide sequence