Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_297

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8664 and 8665 are separated by 315 nucleotides mRNA_296: 8664 - K20177 VPS3, TGFBRAP1 vacuolar protein sorting-associated protein 3, at 698,223 to 702,275 8664 mRNA_297: 8665 - Hypothetical Protein, at 702,591 to 702,936 8665

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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701,873 - -1.9
702,351 + -0.8
702,491 + -0.4
702,510 + -1.1
702,532 - +0.6
702,534 - +0.4
702,649 - 8665 mRNA_297 0.17 +0.5
702,660 - 8665 mRNA_297 0.20 +1.0
702,796 + 8665 mRNA_297 0.59 +0.7
703,043 - -0.2

Or see this region's nucleotide sequence