Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_305

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8673 and 8674 are separated by 490 nucleotides mRNA_305: 8673 - HMMPfam-Peroxisomal biogenesis factor 11 (PEX11)-PF05648, at 726,265 to 727,388 8673 mRNA_306: 8674 - HMMPfam-Relaxase/Mobilisation nuclease domain-PF03432,ProSiteProfiles-Tudor domain profile.-PS50304,SMART-Tudor domain-SM00333,SUPERFAMILY--SSF63748, at 727,879 to 728,992 8674

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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725,508 + -1.4
725,568 - -0.4
725,695 - +1.7
725,729 - +0.1
725,732 + +0.7
725,871 - -0.7
725,872 - -0.0
725,872 + +0.0
725,873 - +0.1
725,884 - +1.3
725,888 - +0.8
725,890 + +1.3
725,963 - -1.0
726,003 + -0.2
726,004 + -0.5
726,006 + +0.3
726,010 + -0.4
726,022 - -0.6
726,026 + +1.0
726,026 + -1.6
726,184 - +1.2
726,293 + -2.4
726,435 + 8673 mRNA_305 0.15 -4.0
726,857 + 8673 mRNA_305 0.53 -4.1
727,311 - -3.1
727,454 + -0.6

Or see this region's nucleotide sequence