Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_307

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8674 and 8675 are separated by 343 nucleotides8675 and 8676 are separated by 351 nucleotides mRNA_306: 8674 - HMMPfam-Relaxase/Mobilisation nuclease domain-PF03432,ProSiteProfiles-Tudor domain profile.-PS50304,SMART-Tudor domain-SM00333,SUPERFAMILY--SSF63748, at 727,879 to 728,992 8674 mRNA_307: 8675 - K12195 CHMP6, VPS20 charged multivesicular body protein 6, at 729,336 to 730,471 8675 mRNA_308: 8676 - K07952 ARFRP1 ADP-ribosylation factor related protein 1, at 730,823 to 731,905 8676

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
729,016 - -0.1
729,047 + +1.7
729,134 + +0.1
729,149 + -0.4
729,303 - -0.7
729,309 + -1.4
729,310 - +0.6
729,333 - -1.9
729,347 - -0.2
729,714 - 8675 mRNA_307 0.33 +0.4
730,515 + -0.3
730,818 + -0.6
730,910 - +0.4
730,923 + -0.4
731,076 - 8676 mRNA_308 0.23 -0.3
731,082 + 8676 mRNA_308 0.24 -1.2
731,214 - 8676 mRNA_308 0.36 +0.8
731,350 - 8676 mRNA_308 0.49 -0.6
731,353 - 8676 mRNA_308 0.49 -1.4
731,372 + 8676 mRNA_308 0.51 +0.5

Or see this region's nucleotide sequence