Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_315

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8682 and 8683 are separated by 224 nucleotides8683 and 8684 are separated by 321 nucleotides mRNA_314: 8682 - K13091 RBM39, RNPC2 RNA-binding protein 39, at 749,609 to 751,814 8682 mRNA_315: 8683 - Hypothetical Protein, at 752,039 to 753,953 8683 mRNA_316: 8684 - K18802 DUG3 glutamine amidotransferase, at 754,275 to 756,026 8684

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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751,422 + 8682 mRNA_314 0.82 -2.0
751,689 - +1.7
751,708 - -1.6
751,711 - -0.6
751,713 + +0.8
751,716 + -0.7
751,836 - -1.3
751,838 - +1.4
751,843 - +1.1
751,844 - -0.7
751,849 + +0.1
751,850 - -0.2
751,874 + +1.0
751,875 + +1.7
751,980 + +0.2
751,987 - +2.5
752,009 + +1.0
752,009 - +0.2
752,010 + -1.9
752,031 + -2.5
752,032 - +2.4
752,041 - -1.3
752,049 + -1.0
752,050 + -0.4
752,061 + -0.3
752,067 - -2.0
752,069 + -0.4
752,069 - +0.1
752,081 + -0.3
752,084 + +0.6
752,086 + -0.8
752,088 + -0.4
752,100 + -0.6
752,112 + -0.2
752,123 + -1.1
752,134 + +0.4
752,142 - -0.2
752,157 - -0.4
752,161 + +1.1
752,161 + -0.1
752,162 - +1.1
752,175 - +1.5
752,189 + +0.1
752,191 + +0.8
752,192 + +1.1
752,192 + +0.6
752,212 + +0.8
752,213 - -3.4
752,227 - +0.5
752,272 + 8683 mRNA_315 0.12 -0.8
752,274 - 8683 mRNA_315 0.12 +0.1
752,283 + 8683 mRNA_315 0.13 -0.4
752,288 - 8683 mRNA_315 0.13 +0.9
752,293 + 8683 mRNA_315 0.13 -0.3
752,295 - 8683 mRNA_315 0.13 -0.1
752,305 - 8683 mRNA_315 0.14 -0.5
752,313 - 8683 mRNA_315 0.14 -0.8
752,315 - 8683 mRNA_315 0.14 -1.7
752,327 + 8683 mRNA_315 0.15 +1.1
752,349 - 8683 mRNA_315 0.16 +1.1
752,354 - 8683 mRNA_315 0.16 +0.8
752,362 + 8683 mRNA_315 0.17 +1.0
752,389 + 8683 mRNA_315 0.18 -0.2
752,393 + 8683 mRNA_315 0.18 +0.4
752,404 + 8683 mRNA_315 0.19 +0.5
752,416 - 8683 mRNA_315 0.20 +0.3
752,424 + 8683 mRNA_315 0.20 +0.8
752,424 - 8683 mRNA_315 0.20 +2.4
752,444 - 8683 mRNA_315 0.21 +0.3
752,448 + 8683 mRNA_315 0.21 -0.2
752,463 + 8683 mRNA_315 0.22 +1.2
752,503 - 8683 mRNA_315 0.24 +0.8
752,629 - 8683 mRNA_315 0.31 -1.6
752,662 - 8683 mRNA_315 0.33 +0.3
752,692 - 8683 mRNA_315 0.34 +1.2
752,748 + 8683 mRNA_315 0.37 +0.1
752,874 + 8683 mRNA_315 0.44 -1.1
753,201 - 8683 mRNA_315 0.61 +1.1
753,324 + 8683 mRNA_315 0.67 +1.2
753,345 - 8683 mRNA_315 0.68 +1.2
753,476 - 8683 mRNA_315 0.75 +0.3
753,607 - 8683 mRNA_315 0.82 +0.9
753,763 + +0.2
754,049 + +1.0
754,060 + +1.4
754,194 - +0.8
754,208 + +0.4
754,469 - 8684 mRNA_316 0.11 +0.1
754,502 - 8684 mRNA_316 0.13 -0.2
754,505 + 8684 mRNA_316 0.13 +0.3
754,652 + 8684 mRNA_316 0.22 +0.2
754,764 - 8684 mRNA_316 0.28 -2.0
754,897 - 8684 mRNA_316 0.36 -0.9

Or see this region's nucleotide sequence