Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_326

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8693 and 8694 are separated by 209 nucleotides8694 and 8695 are separated by 226 nucleotides mRNA_325: 8693 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 770,334 to 776,057 8693 mRNA_326: 8694 - K17983 SHE9 sensitive to high expression protein 9, mitochondrial, at 776,267 to 777,781 8694 mRNA_327: 8695 - KOG0378 40S ribosomal protein S4, at 778,008 to 779,249 8695

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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775,269 + 8693 mRNA_325 0.86 +0.8
775,425 + 8693 mRNA_325 0.89 -0.1
775,688 - +0.8
776,012 + -0.3
776,136 - -1.9
776,136 - +0.5
776,139 + -1.8
776,146 - -0.6
776,154 - -1.4
776,164 + -0.1
776,170 - -1.1
776,241 - +2.1
776,478 + 8694 mRNA_326 0.14 -1.0
777,052 + 8694 mRNA_326 0.52 -0.4
777,187 - 8694 mRNA_326 0.61 +0.0
777,189 + 8694 mRNA_326 0.61 -2.0
777,335 + 8694 mRNA_326 0.70 -0.9
777,617 + 8694 mRNA_326 0.89 -2.0
777,627 + 8694 mRNA_326 0.90 -1.5
777,790 + +0.5
777,798 + +0.4
777,814 + -1.0
777,819 + +0.5
777,840 + -1.1
778,699 - 8695 mRNA_327 0.56 +0.6

Or see this region's nucleotide sequence