Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_334

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8702 and 8703 are separated by 92 nucleotides mRNA_334: 8702 - K00938 E2.7.4.2, mvaK2 phosphomevalonate kinase, at 792,166 to 794,119 8702 mRNA_335: 8703 - BLAST LOC100145131 protein [Xenopus tropicalis], at 794,212 to 794,991 8703

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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791,167 + +0.4
791,168 + -2.2
791,170 + +0.5
791,177 + -0.2
791,292 + +0.3
791,298 - +0.4
791,299 - +0.3
791,303 + +2.3
791,311 - -1.2
791,311 - -0.5
791,314 + -0.7
791,314 + +1.7
791,317 - -0.7
791,321 + -0.6
791,329 - -0.1
791,416 - -1.2
791,435 - -0.2
791,437 + -1.8
791,439 + -0.3
791,441 - -0.5
791,445 - -0.8
791,449 + -1.0
791,450 + -0.2
791,452 - +2.6
791,455 - -0.5
791,462 + -1.3
791,475 - +1.2
791,483 - +0.7
791,489 + -0.7
791,494 - +0.1
791,496 - -3.6
791,496 - +0.3
791,497 + -1.1
791,513 - -1.2
791,514 + +0.5
791,522 - +0.6
791,532 - +1.0
791,533 + -0.1
791,536 - -0.9
791,551 + -0.0
791,618 - -0.2
791,627 - -0.1
791,631 - -0.6
791,641 - +3.3
791,644 + -0.5
791,645 + +0.7
791,649 + -1.0
791,653 - -0.5
791,653 + +0.1
791,660 - -0.4
791,666 - -0.1
791,670 - -0.1
791,674 + -1.5
791,685 - +0.7
791,693 + -0.4
791,697 + -0.7
791,706 - +0.2
791,725 - -1.4
791,731 + -0.7
791,732 + -2.1
791,733 - -0.7
791,749 - +0.8
791,762 + -0.7
791,909 - -2.5
791,916 - -0.6
791,918 + -0.8
792,054 + -0.7
792,068 - +0.6
794,216 - -0.6
794,984 - -0.4
795,085 + -0.5
795,089 + -1.3
795,096 - -2.0
795,105 - -0.9

Or see this region's nucleotide sequence