Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_338

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8705 and 8706 are separated by 527 nucleotides8706 and 8707 overlap by 4 nucleotides mRNA_337: 8705 - HMMPfam-Glycosyl hydrolases family 17-PF00332,SUPERFAMILY--SSF51445, at 795,968 to 797,601 8705 mRNA_338: 8706 - Hypothetical Protein, at 798,129 to 798,620 8706 mRNA_339: 8707 - K01693 hisB imidazoleglycerol-phosphate dehydratase, at 798,617 to 799,510 8707

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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797,388 - 8705 mRNA_337 0.87 +2.0
797,538 + +0.3
797,561 + +1.4
797,652 - +0.9
797,690 - -0.4
797,985 - -0.3
798,133 + -0.1
798,138 - +0.1
798,270 + 8706 mRNA_338 0.29 -0.4
798,291 + 8706 mRNA_338 0.33 +0.2
798,504 - 8706 mRNA_338 0.76 -0.7
799,536 + -2.0
799,555 - +1.1
799,569 - -1.9
799,575 + +0.2

Or see this region's nucleotide sequence