Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_363

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8730 and 8731 are separated by 150 nucleotides8731 and 8732 are separated by 101 nucleotides mRNA_362: 8730 - HMMPfam-CENP-S associating Centromere protein X-PF09415,SUPERFAMILY--SSF47113, at 842,601 to 843,076 8730 mRNA_363: 8731 - K14776 DDX10, DBP4 ATP-dependent RNA helicase DDX10/DBP4, at 843,227 to 846,125 8731 mRNA_364: 8732 - KOG2498 IK cytokine down-regulator of HLA class II, at 846,227 to 847,901 8732

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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842,301 - -0.7
842,710 - 8730 mRNA_362 0.23 +0.6
842,852 - 8730 mRNA_362 0.53 -1.6
842,863 + 8730 mRNA_362 0.55 -1.1
842,868 + 8730 mRNA_362 0.56 -0.3
842,998 - 8730 mRNA_362 0.83 -0.5
843,005 + 8730 mRNA_362 0.85 -0.1
843,015 - 8730 mRNA_362 0.87 +1.5
843,142 - +0.2
843,154 - +0.1
843,160 + +0.5
843,172 + +0.0
843,176 - -1.5
843,183 - +1.0
846,950 + 8732 mRNA_364 0.43 -0.2

Or see this region's nucleotide sequence