Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_397

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8764 and 8765 are separated by 169 nucleotides8765 and 8766 are separated by 269 nucleotides mRNA_396: 8764 - K07478 ycaJ putative ATPase, at 921,691 to 924,142 8764 mRNA_397: 8765 - SUPERFAMILY--SSF52047, at 924,312 to 925,720 8765 mRNA_398: 8766 - KOG1305 Amino acid transporter protein, at 925,990 to 928,121 8766

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
923,518 - 8764 mRNA_396 0.75 +0.9
923,546 - 8764 mRNA_396 0.76 -2.3
923,553 - 8764 mRNA_396 0.76 +1.0
924,076 - +1.0
924,126 - -1.2
924,389 - +0.8
924,518 - 8765 mRNA_397 0.15 +0.4
924,536 - 8765 mRNA_397 0.16 -1.1
924,542 + 8765 mRNA_397 0.16 -0.3
924,560 + 8765 mRNA_397 0.18 +0.2
924,650 + 8765 mRNA_397 0.24 -0.3
924,783 - 8765 mRNA_397 0.33 +1.3
924,994 + 8765 mRNA_397 0.48 -1.7
925,442 - 8765 mRNA_397 0.80 +0.2
925,578 - 8765 mRNA_397 0.90 -1.5
925,853 - +0.0
925,858 - -0.4
925,859 + +0.3
925,875 - -0.7
925,876 - +1.2
925,876 + +0.9
925,883 - -0.7
925,889 + +0.9
925,890 - +0.6
925,995 - +1.1
926,030 - -1.4
926,154 + -2.0
926,167 - +0.1
926,462 + 8766 mRNA_398 0.22 +0.3
926,556 + 8766 mRNA_398 0.27 +1.0
926,594 + 8766 mRNA_398 0.28 +1.0
926,615 - 8766 mRNA_398 0.29 +0.8

Or see this region's nucleotide sequence