Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_416

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8783 and 8784 are separated by 270 nucleotides8784 and 8785 are separated by 124 nucleotides mRNA_415: 8783 - K03511 POLK DNA polymerase kappa, at 969,041 to 971,775 8783 mRNA_416: 8784 - Hypothetical Protein, at 972,046 to 973,465 8784 mRNA_417: 8785 - KOG4697 Integral membrane protein involved in transport between the late Golgi and endosome, at 973,590 to 974,560 8785

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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971,085 - 8783 mRNA_415 0.75 +0.1
971,231 + 8783 mRNA_415 0.80 +0.8
971,406 + 8783 mRNA_415 0.86 +0.2
971,520 - -0.7
971,676 - -0.7
971,794 + -1.5
971,807 - +0.4
971,959 - +1.8
971,972 - -1.1
971,990 - -1.0
972,009 + +1.6
972,230 + 8784 mRNA_416 0.13 +1.4
972,248 - 8784 mRNA_416 0.14 +0.3
972,292 + 8784 mRNA_416 0.17 +1.1
972,396 - 8784 mRNA_416 0.25 -0.1
972,397 + 8784 mRNA_416 0.25 -1.6
972,818 + 8784 mRNA_416 0.54 -0.6
972,854 + 8784 mRNA_416 0.57 +0.3
973,013 + 8784 mRNA_416 0.68 +0.4
973,096 - 8784 mRNA_416 0.74 +0.7
973,264 + 8784 mRNA_416 0.86 +0.3
973,447 - +0.0
973,484 - +0.3
973,582 - +1.1
973,583 - -2.6
973,704 - 8785 mRNA_417 0.12 -0.2
973,721 + 8785 mRNA_417 0.13 +0.0
973,722 - 8785 mRNA_417 0.14 +2.2

Or see this region's nucleotide sequence