Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_449

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8816 and 8817 are separated by 278 nucleotides8817 and 8818 are separated by 616 nucleotides mRNA_448: 8816 - K20221 IPO4, RANBP4 importin-4, at 1,043,184 to 1,046,908 8816 mRNA_449: 8817 - HMMPfam-ESSS subunit of NADH-ubiquinone oxidoreductase (complex I)-PF10183, at 1,047,187 to 1,047,536 8817 mRNA_450: 8818 - K09525 DNAJC5 DnaJ homolog subfamily C member 5, at 1,048,153 to 1,050,379 8818

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,046,716 + -1.8
1,046,827 + -0.5
1,046,843 - -0.3
1,046,859 + +0.0
1,046,954 + -1.2
1,046,980 - +0.6
1,047,111 + -0.0
1,047,284 - 8817 mRNA_449 0.28 -0.6
1,047,988 - +0.0
1,047,995 + -0.8
1,048,012 + -3.1
1,048,018 + +0.5
1,048,037 + -0.8
1,048,039 + +0.0
1,048,042 - -2.6
1,048,049 + +0.0
1,048,194 - -0.6

Or see this region's nucleotide sequence