Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_510

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8877 and 8878 are separated by 927 nucleotides8878 and 8879 are separated by 176 nucleotides mRNA_509: 8877 - K11566 ASK1 DASH complex subunit ASK1, at 1,211,360 to 1,213,561 8877 mRNA_510: 8878 - K01922 PPCS, coaB phosphopantothenate-cysteine ligase, at 1,214,489 to 1,216,016 8878 mRNA_511: 8879 - KOG1426 FOG RCC1 domain, at 1,216,193 to 1,218,102 8879

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,213,838 - +1.3
1,213,838 - +1.8
1,213,891 + +1.4
1,214,146 - +0.9
1,216,143 - +1.3
1,216,552 + 8879 mRNA_511 0.19 -0.4

Or see this region's nucleotide sequence