Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_530

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8897 and 8898 are separated by 606 nucleotides8898 and 8899 are separated by 133 nucleotides mRNA_529: 8897 - Hypothetical Protein, at 1,262,643 to 1,263,431 8897 mRNA_530: 8898 - Hypothetical Protein, at 1,264,038 to 1,264,727 8898 mRNA_531: 8899 - KOG1812 Predicted E3 ubiquitin ligase, at 1,264,861 to 1,266,270 8899

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,263,304 - 8897 mRNA_529 0.84 -1.1
1,263,308 + 8897 mRNA_529 0.84 -0.9
1,263,504 - -0.4
1,263,678 - -0.2
1,263,787 - +1.7

Or see this region's nucleotide sequence